Development of a sensitive real-time reverse transcriptase PCR assay with an internal control to detect and quantify chikungunya virus
Autor(es)Laurent Philippe, Le Roux Karin, Grivard Philippe, Bertil Gérard, Naze Florence, Picard Miguel, Staikowsky Frédérik, Barau Georges, Schuffenecker Isabelle, Michault Alain
ResumoThe chikungunya virus (CHIKV; Alphavirus, Togaviridae) has emerged in the south Western Indian Ocean since early 2005. A major outbreak of CHIKV infection occurred in Réunion Isl-, where the virus is transmitted by Aedes albopictus mosquitoes. Facing an outbreak of unprecedented magnitude, we developed a rapid, sensitive, - reliable assay for the detection - quantification of CHIKV in plasma samples. A dual-color TaqMan 1-step reverse transcriptase PCR assay was developed in a LightCycler 2.0 system. A coextracted - coamplified chimerical RNA sequence was used as an internal control (IC) to eliminate false-negative results. The CHIKV-specific - IC probes were labeled with 6-carboxyfluorescein (530 nm) - the wide span dye DYXL (705 nm), respectively, eliminating the need for color compensation. A synthetic RNA was used as an external calibrator for CHIKV absolute quantification. The detection limit was 350 copies/mL (3 copies/capillary). A further improvement to approximately 40 copies/mL was obtained by use of a larger volume of plasma. The assay specificity was confirmed in vitro - in silico. CHIKV in 343 patients was present at viral loads >10(8) copies/mL, mainly in newborns - seniors >60 years old. Long viremic phases of up to 12 days were seen in 6 patients. The assay is rapid, CHIKV-specific, - highly sensitive, - it includes an IC. It proved useful to detect - quantify CHIKV during the Réunion Isl- epidemic. The assay might be applicable to other CHIKV epidemics, especially in the Indian subcontinent, where an extensive outbreak is ongoing.
ImprentaClinical Chemistry, v. 53, n. 8, p. 1408-1414, 2007
Identificador do Objeto Digital10.1373/clinchem.2007.086595
DescritoresChikungunya virus - Pathogenesis ; Chikungunya virus - RNA ; Chikungunya virus - Viral infections ; Chikungunya virus - PCR detection ; Chikungunya virus - Real Time PCR ; Chikungunya virus - RT-PCR ; Chikungunya Virus - Virus ; Chikungunya virus - Epidemic ; Chikungunya virus - Public health
Data de Publicação:2007